MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Shigella flexneri
19428wH2_1568
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
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Genome Info
Taxon Description
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NCBI Genome Annotation:
contigs: 237
bases: 5,139,722 bps
CDS: 5,034
rRNA: 13
tRNA: 87
tmRNA: 1
Total number of protein coding genes annotated/found:
4,833
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Items 41 - 60
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Molecule ^
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5015|JADGKR010000022.1
MBF0742237.1
Genome Viewer
NA
AA
2268/756
33659-31392
arginine decarboxylase
SEQF5015|JADGKR010000022.1
MBF0742235.1
Genome Viewer
NA
AA
1338/446
30169-28832
arginine/agmatine antiporter
SEQF5015|JADGKR010000022.1
MBF0742236.1
Genome Viewer
NA
AA
762/254
31067-30306
DNA-binding transcriptional activator AdiY
SEQF5015|JADGKR010000039.1
MBF0743087.1
Genome Viewer
NA
AA
645/215
7277-7921
adenylate kinase
SEQF5015|JADGKR010000019.1
MBF0741952.1
Genome Viewer
NA
AA
1116/372
12338-13453
diguanylate cyclase AdrA
SEQF5015|JADGKR010000002.1
MBF0739408.1
Genome Viewer
NA
AA
1980/660
140789-142768
formate-dependent uric acid utilization protein AegA
SEQF5015|JADGKR010000004.1
MBF0739802.1
Genome Viewer
NA
AA
1521/507
27548-26028
aerotaxis sensor receptor Aer
SEQF5015|JADGKR010000039.1
MBF0743089.1
Genome Viewer
NA
AA
960/320
10075-9116
acetyl esterase
SEQF5015|JADGKR010000022.1
MBF0742265.1
Genome Viewer
NA
AA
2847/949
65437-62591
autotransporter adhesin Ag43
SEQF5015|JADGKR010000030.1
MBF0742755.1
Genome Viewer
NA
AA
3123/1041
55784-52662
autotransporter adhesin Ag43
SEQF5015|JADGKR010000004.1
MBF0739870.1
Genome Viewer
NA
AA
477/159
100168-100644
PTS N-acetylgalactosamine transporter subunit IIB
SEQF5015|JADGKR010000004.1
MBF0739871.1
Genome Viewer
NA
AA
804/268
100683-101486
PTS N-acetylgalactosamine transporter subunit IIC
SEQF5015|JADGKR010000004.1
MBF0739872.1
Genome Viewer
NA
AA
792/264
101476-102267
PTS N-acetylgalactosamine transporter subunit IID
SEQF5015|JADGKR010000004.1
MBF0739861.1
Genome Viewer
NA
AA
810/270
92359-91550
aga operon transcriptional regulator AgaR
SEQF5015|JADGKR010000004.1
MBF0739863.1
Genome Viewer
NA
AA
474/158
93911-94384
PTS N-acetylgalactosamine transporter subunit IIB
SEQF5015|JADGKR010000006.1
MBF0740270.1
Genome Viewer
NA
AA
1242/414
80621-81862
bifunctional glucose-1-phosphatase/inositol phosphatase
SEQF5015|JADGKR010000012.1
MBF0741205.1
Genome Viewer
NA
AA
564/188
54728-55291
alkyl hydroperoxide reductase subunit C
SEQF5015|JADGKR010000012.1
MBF0741206.1
Genome Viewer
NA
AA
1566/522
55420-56985
alkyl hydroperoxide reductase subunit F
SEQF5015|JADGKR010000032.1
MBF0742843.1
Genome Viewer
NA
AA
1020/340
28963-29982
NADPH-dependent aldehyde reductase Ahr
SEQF5015|JADGKR010000001.1
MBF0739245.1
Genome Viewer
NA
AA
1218/406
276053-277270
alanine transaminase AlaA
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Items 41 - 60
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* Click GI,UID,Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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